I could probably backup most of my important data to a flash drive but I'd rather not.
You should ALWAYS back up any important/irreplaceable data before making any changes to your hard drives, even if you think the risk is low. Accidents happen.
You can move the drive from one slot to the other, the drive's UUID should not change. You'll just need to change the boot drive selected in UEFI. Physically swapping the drives will be faster, easier and less failure-prone than trying to move your boot and root partitions between drives.
For editing drive formats and partitions, the best tool is gparted: https://gparted.org/
It's convenient to have gparted installed on a USB drive so that you can live boot it and use it to make changes to the system drive(s). With gparted you can simply erase the Windows drive and create a new partition formatted for Linux (probably ext4).
If you are not already familiar with editing disk partitions and formats, you should read some tutorials first: https://gparted.org/articles.php
As for encryption, some Linux installers have this as a selectable option during the install process. If Mint does, you should consider reinstalling anyway to use that, as you are more likely to have it working properly.
If you just want to encrypt your data partition(s) you can implement LUKS with cryptsetup: https://linuxvox.com/blog/linux-luks-encryption/
Note that this is the most basic use, it does not cover FDE. If you want to also encrypt /boot so that your computer will not start without being unlocked, that is more complicated to set up:
!! YOU SHOULD READ A LOT OF INFORMATION BEFORE ATTEMPTING THIS !!
https://askubuntu.com/questions/1470391/luks-tpm2-auto-unlock-at-boot-systemd-cryptenroll
https://cryptsetup-team.pages.debian.net/cryptsetup/encrypted-boot.html
Be aware that doing anything wrong in this process is likely to leave you with an unbootable system, and unable to recover any data from the encrypted partition/drive. You need to be sure that the steps you're going to take are relevant for your hardware and OS before you start, and that you have all of the necessary utilities installed.
Again, if Mint has a selectable option for this in its installer, you will have much better chances of success reinstalling with that.
Don't skip the backup.